documentation overview
The following table lists all submodules of findmycells in alphabetical order. Please note that the displayed table only serves as an overview of all submodules and does neither represent the correct arrangement of the submodules, nor (neccessarily) the exact name of the submodule. These information, however, can be found in parentheses at the end of each description.
| Title | Description |
|---|---|
| configs | Defines several classes that handle the different configuration levels and options (findmycells.configs) |
| core | Defines central classes that are re-used throughout the findmycells package (findmycells.core) |
| database | Defines a database and file history tracker that stores all relevant information of your findmycells project (findmycells.database) |
| inspection | Defines all available methods that you can use to interactively inspect the final (i.e. postprocessed and quantified) segmentation results (findmycells.inspection.methods) |
| interfaces | Defines the top-level API and the GUI of findmycells (findmycells.interfaces) |
| postprocessing subclasses | Extends the classes defined in core for the postprocessing-specific requirements (findmycells.postprocessing.specs) |
| postprocessing options | Defines all options you can use for postprocessing of your segmentation data (findmycells.postprocessing.strategies) |
| preprocessing subclasses | Extends the classes defined in core for the preprocessing-specific requirements (findmycells.preprocessing.specs) |
| preprocessing options | Defines all options you can use for preprocessing of your image data (findmycells.preprocessing.strategies) |
| quantification subclasses | Extends the classes defined in core for the quantification-specific requirements (findmycells.quantification.specs) |
| quantification strategies | Defines all options you can use for quantification of your postprocessed segmentation data (findmycells.quantification.strategies) |
| reader specifications | Defines the generic classes to handle import of data (images & ROIs) to findmycells that will by extended by specific reader submodules (findmycells.readers.specs) |
| readers for microscopy images | Extends the generic reader classes for specific image data types (findmycells.readers.microscopy_images) |
| readers for ROI-files | Extends the generic reader classes for specific ROI data types (findmycells.readers.rois) |
| segmentation subclasses | Extends the classes defined in core for the segmentation-specific requirements (findmycells.segmentation.specs) |
| segmentation strategies | Defines all options you can use for segmentation of your preprocessed image data (findmycells.segmentation.strategies) |
| utility functions | Defines several general purpose functions that are used throughout findmycells (findmycells.utils) |
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