twoD/detect

Functions specifically related to event detection of 2D recordings

create_behavior_df

 create_behavior_df (normalized_df:pandas.core.frame.DataFrame,
                     bodyparts_to_include:List[str])

source

add_orientation_to_behavior_df

 add_orientation_to_behavior_df (behavior_df:pandas.core.frame.DataFrame,
                                 all_bodyparts:Dict, bodyparts_for_directi
                                 on_front_to_back:List[str])

source

add_immobility_based_on_several_bodyparts_to_behavior_df

 add_immobility_based_on_several_bodyparts_to_behavior_df
                                                           (behavior_df:pa
                                                           ndas.core.frame
                                                           .DataFrame, all
                                                           _bodyparts:Dict
                                                           , bodyparts_cri
                                                           tical_for_freez
                                                           ing:List[str])

source

get_immobility_related_events

 get_immobility_related_events (behavior_df:pandas.core.frame.DataFrame,
                                fps:float, min_interval_duration:float,
                                event_type:str)

source

create_event_objects

 create_event_objects (interval_border_idxs:List[Tuple[int,int]], fps:int,
                       event_type:str)

source

add_event_bouts_to_behavior_df

 add_event_bouts_to_behavior_df (behavior_df:pandas.core.frame.DataFrame,
                                 event_type:str, events:List[gait_analysis
                                 .core.EventBout])

source

get_gait_events

 get_gait_events (all_bodyparts:Dict, fps:int,
                  gait_min_rolling_speed:float, gait_min_duration:float)

source

get_gait_disruption_events

 get_gait_disruption_events (behavior_df:pandas.core.frame.DataFrame,
                             fps:int, gait_events:List[gait_analysis.core.
                             EventBout],
                             gait_disruption_max_time_to_immobility:float)

source

get_interval_border_idxs_from_event_type_and_id

 get_interval_border_idxs_from_event_type_and_id
                                                  (behavior_df:pandas.core
                                                  .frame.DataFrame,
                                                  event_type:str,
                                                  event_id:int)